4YL1 Crystal Structures of mPGES-1 Inhibitor Complexes date
authors Luz, J.G., Antonysamy, S., Kuklish, S.L., Fisher, M.J.
compound source
symmetry
R_factor
R_Free 0.17460
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.41
ligand 4U8, BOG, GSH, PEG, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • glutathione peroxidase activ...


    • Primary referenceCrystal Structures of mPGES-1 Inhibitor Complexes Form a Basis for the Rational Design of Potent Analgesic and Anti-Inflammatory Therapeutics., Luz JG, Antonysamy S, Kuklish SL, Condon B, Lee MR, Allison D, Yu XP, Chandrasekhar S, Backer R, Zhang A, Russell M, Chang SS, Harvey A, Sloan AV, Fisher MJ, J Med Chem. 2015 May 20. PMID:25961169
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4yl1.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 4YL1
  • CSU: Contacts of Structural Units for 4YL1
  • Structure Factors (531 Kb)
  • Retrieve 4YL1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YL1 from S2C, [Save to disk]
  • Re-refined 4yl1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YL1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YL1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YL1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f4yl1, region L:1-110 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yl1] [4yl1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YL1
  • Community annotation for 4YL1 at PDBWiki (http://pdbwiki.org)

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