4YLZ Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with lacto-N-neotetraose (LNnT) date
authors Bum-Erdene, K., Blanchard, H.
compound source
symmetry
R_factor
R_Free 0.2654
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand BGC, GAL, GOL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural characterisation of human galectin-4 C-terminal domain -elucidating the molecular basis for recognition of glycosphingolipids, sulfated saccharides and blood group antigens., Bum-Erdene K, Leffler H, Nilsson UJ, Blanchard H, FEBS J. 2015 Jun 16. doi: 10.1111/febs.13348. PMID:26077389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4ylz.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (4ylz.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (4ylz.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (4ylz.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 4YLZ
  • CSU: Contacts of Structural Units for 4YLZ
  • Structure Factors (544 Kb)
  • Retrieve 4YLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YLZ from S2C, [Save to disk]
  • Re-refined 4ylz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YLZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ylz_A] [4ylz_D] [4ylz_C] [4ylz_B] [4ylz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YLZ: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 4YLZ
  • Community annotation for 4YLZ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science