4YM1 Crystal structure of the human galectin-4 C-terminal carbohydrate recognition domain in complex with 2'-fucosyllactose date
authors Bum-Erdene, K., Blanchard, H.
compound source
symmetry
R_factor
R_Free 0.2128
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand BGC, FUC, GAL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural characterisation of human galectin-4 C-terminal domain -elucidating the molecular basis for recognition of glycosphingolipids, sulfated saccharides and blood group antigens., Bum-Erdene K, Leffler H, Nilsson UJ, Blanchard H, FEBS J. 2015 Jun 16. doi: 10.1111/febs.13348. PMID:26077389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4ym1.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (4ym1.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (4ym1.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (4ym1.pdb4.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 4YM1
  • CSU: Contacts of Structural Units for 4YM1
  • Structure Factors (1910 Kb)
  • Retrieve 4YM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YM1 from S2C, [Save to disk]
  • Re-refined 4ym1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ym1_C] [4ym1] [4ym1_A] [4ym1_D] [4ym1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YM1: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 4YM1
  • Community annotation for 4YM1 at PDBWiki (http://pdbwiki.org)

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