4YM4 Truncated Human TIFA in complex with its Thr9 phosphorylated N-terminal peptide 1-15 date
authors Weng, J.H., Wei, T.Y.W., Hsieh, Y.C., Huang, C.C.F., Wu, P.Y.G., Chen, E.S.W., Huang, K.F., Chen, C.J., Tsai, M.D.
compound source
symmetry
R_factor
R_Free 0.2386
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.12
ligand MSE, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUncovering the Mechanism of Forkhead-Associated Domain-Mediated TIFA Oligomerization That Plays a Central Role in Immune Responses., Weng JH, Hsieh YC, Huang CC, Wei TY, Lim LH, Chen YH, Ho MR, Wang I, Huang KF, Chen CJ, Tsai MD, Biochemistry. 2015 Oct 13;54(40):6219-29. doi: 10.1021/acs.biochem.5b00500. Epub , 2015 Oct 1. PMID:26389808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (4ym4.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 4YM4
  • CSU: Contacts of Structural Units for 4YM4
  • Structure Factors (86 Kb)
  • Retrieve 4YM4 in mmCIF format [Save to disk]
  • Re-refined 4ym4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YM4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ym4_B] [4ym4_A] [4ym4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YM4: [FHA ] by SMART
    • Other resources with information on 4YM4
  • Community annotation for 4YM4 at PDBWiki (http://pdbwiki.org)

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