4YM5		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	T64	enzyme
Gene Ontology	Chain Function Process Component A, E B, F D, H G, C
Primary reference	Structural basis of pyrimidine-pyrimidone (6-4) photoproduct recognition by UV-DDB in the nucleosome., Osakabe A, Tachiwana H, Kagawa W, Horikoshi N, Matsumoto S, Hasegawa M, Matsumoto N, Toga T, Yamamoto J, Hanaoka F, Thoma NH, Sugasawa K, Iwai S, Kurumizaka H, Sci Rep. 2015 Nov 17;5:16330. doi: 10.1038/srep16330. PMID:26573481

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk] Biological Unit Coordinates (4ym5.pdb1.gz) 238 Kb LPC: Ligand-Protein Contacts for 4YM5 CSU: Contacts of Structural Units for 4YM5 Structure Factors (278 Kb) Retrieve 4YM5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YM5 from S2C, [Save to disk] Re-refined 4ym5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YM5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ym5] [4ym5_A] [4ym5_B] [4ym5_C] [4ym5_D] [4ym5_E] [4ym5_F] [4ym5_G] [4ym5_H] [4ym5_I] [4ym5_J] SWISS-PROT database: Domains found in 4YM5: [H2A] [H2B] [H3] [H4 ] by SMART

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