4YMC Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2 date
authors Gurung, S.P., Hall, J.P., Cardin, C.J.
compound source
symmetry
R_factor
R_Free 0.25736
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.88
ligand BA, CL, RKL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (4ymc.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 4YMC
  • CSU: Contacts of Structural Units for 4YMC
  • Structure Factors (61 Kb)
  • Retrieve 4YMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YMC from S2C, [Save to disk]
  • Re-refined 4ymc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YMC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ymc_A] [4ymc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YMC
  • Community annotation for 4YMC at PDBWiki (http://pdbwiki.org)

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