4YNE (R)-2-Phenylpyrrolidine Substitute Imidazopyridazines: a New Class of Potent and Selective Pan-TRK Inhibitors date
authors Kreusch, A., Rucker, P., Molteni, V., Loren, J.
compound source
symmetry
R_factor
R_Free 0.2163
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand 4EK, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference(R)-2-Phenylpyrrolidine Substituted Imidazopyridazines: A New Class of Potent and Selective Pan-TRK Inhibitors., Choi HS, Rucker PV, Wang Z, Fan Y, Albaugh P, Chopiuk G, Gessier F, Sun F, Adrian F, Liu G, Hood T, Li N, Jia Y, Che J, McCormack S, Li A, Li J, Steffy A, Culazzo A, Tompkins C, Phung V, Kreusch A, Lu M, Hu B, Chaudhary A, Prashad M, Tuntland T, Liu B, Harris J, Seidel HM, Loren J, Molteni V, ACS Med Chem Lett. 2015 Mar 16;6(5):562-7. doi: 10.1021/acsmedchemlett.5b00050., eCollection 2015 May 14. PMID:26005534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4yne.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4YNE
  • CSU: Contacts of Structural Units for 4YNE
  • Structure Factors (440 Kb)
  • Retrieve 4YNE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YNE from S2C, [Save to disk]
  • Re-refined 4yne structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YNE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YNE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YNE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yne] [4yne_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YNE: [TyrKc ] by SMART
    • Other resources with information on 4YNE
  • Community annotation for 4YNE at PDBWiki (http://pdbwiki.org)

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