4YNK date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand YW2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, Biological Activities, and X-ray Crystal Structural Analysis of 25-Hydroxy-25(or 26)-adamantyl-17-[20(22),23-diynyl]-21-norvitamin D Compounds., Watarai Y, Ishizawa M, Ikura T, Zacconi FC, Uno S, Ito N, Mourino A, Tokiwa H, Makishima M, Yamada S, J Med Chem. 2015 Dec 24;58(24):9510-21. doi: 10.1021/acs.jmedchem.5b00792. Epub, 2015 Dec 15. PMID:26613420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4ynk.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 4YNK
  • CSU: Contacts of Structural Units for 4YNK
  • Structure Factors (130 Kb)
  • Retrieve 4YNK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YNK from S2C, [Save to disk]
  • Re-refined 4ynk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YNK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ynk] [4ynk_A] [4ynk_C]
  • SWISS-PROT database:
  • Domain found in 4YNK: [HOLI ] by SMART

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