4YNM Transferase date Mar 10, 2015
title Ash1l Wild-Type Set Domain In Complex With S-Adenosyl Methio
authors D.S.Rogawski, J.Ndoj, H.J.Cho, I.Maillard, J.Grembecka, T.Cierpi
compound source
Molecule: Histone-Lysine N-Methyltransferase Ash1l
Chain: A, B
Fragment: Set Domain (Unp Residues 2074-2293)
Synonym: Ash1-Like Protein,Huash1,Absent Small And Homeotic Protein 1 Homolog,Lysine N-Methyltransferase 2h;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash1l, Kiaa1420, Kmt2h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.242 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.141 59.141 230.983 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.19 Å
ligand SAM, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Primary referenceTwo Loops Undergoing Concerted Dynamics Regulate the Activity of the ASH1L Histone Methyltransferase., Rogawski DS, Ndoj J, Cho HJ, Maillard I, Grembecka J, Cierpicki T, Biochemistry. 2015 Aug 25. PMID:26292256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4ynm.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (4ynm.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4YNM
  • CSU: Contacts of Structural Units for 4YNM
  • Structure Factors (464 Kb)
  • Retrieve 4YNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YNM from S2C, [Save to disk]
  • Re-refined 4ynm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YNM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4ynm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ynm_B] [4ynm_A] [4ynm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YNM: [AWS] [PostSET] [SET ] by SMART
  • Other resources with information on 4YNM
  • Community annotation for 4YNM at PDBWiki (http://pdbwiki.org)

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