4YNX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SO4 enzyme
Primary referenceThe crystal and solution structure of YdiE from Escherichia coli., Nishimura K, Addy C, Shrestha R, Voet AR, Zhang KY, Ito Y, Tame JR, Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):919-24. doi:, 10.1107/S2053230X15009140. Epub 2015 Jun 27. PMID:26144239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4ynx.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4YNX
  • CSU: Contacts of Structural Units for 4YNX
  • Structure Factors (86 Kb)
  • Retrieve 4YNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YNX from S2C, [Save to disk]
  • Re-refined 4ynx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ynx] [4ynx_A] [4ynx_B]
  • SWISS-PROT database:

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science