OCA Atlas for 4YP8

4YP8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

4GF, SEP, TPO

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, A, B

Primary reference

Potent and Selective Amidopyrazole Inhibitors of IRAK4 That Are Efficacious in a Rodent Model of Inflammation., McElroy WT, Tan Z, Ho G, Paliwal S, Li G, Seganish WM, Tulshian D, Tata J, Fischmann TO, Sondey C, Bian H, Bober L, Jackson J, Garlisi CG, Devito K, Fossetta J, Lundell D, Niu X, ACS Med Chem Lett. 2015 May 12;6(6):677-82. doi: 10.1021/acsmedchemlett.5b00106. , eCollection 2015 Jun 11. PMID:26101573

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]

Biological Unit Coordinates (4yp8.pdb1.gz) 49 Kb

Biological Unit Coordinates (4yp8.pdb2.gz) 48 Kb

Biological Unit Coordinates (4yp8.pdb3.gz) 49 Kb

Biological Unit Coordinates (4yp8.pdb4.gz) 49 Kb

LPC: Ligand-Protein Contacts for 4YP8

CSU: Contacts of Structural Units for 4YP8

Structure Factors (1128 Kb)

Retrieve 4YP8 in mmCIF format [Save to disk]

Re-refined 4yp8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YP8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yp8] [4yp8_A] [4yp8_B] [4yp8_C] [4yp8_D]

SWISS-PROT database:

Domain found in 4YP8: [STYKc ] by SMART

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