4YP9 Crystal Structure of LuxP In Complex With a Formose Derived AI-2 Analogue date
authors McDonough, M.A., Sattin, S., Gardner, P.M., Liu, C., Davis, B.G.
compound source
symmetry
R_factor
R_Free 0.2185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand A1B, CA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4yp9.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4YP9
  • CSU: Contacts of Structural Units for 4YP9
  • Structure Factors (213 Kb)
  • Retrieve 4YP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YP9 from S2C, [Save to disk]
  • Re-refined 4yp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YP9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yp9] [4yp9_A] [4yp9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YP9
  • Community annotation for 4YP9 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science