4YPE Transferase date Mar 12, 2015
title Ash1l Set Domain H2193f Mutant In Complex With S-Adenosyl Me (Sam)
authors D.S.Rogawski, J.Ndoj, H.J.Cho, I.Maillard, J.Grembecka, T.Cierpic
compound source
Molecule: Histone-Lysine N-Methyltransferase Ash1l
Chain: A, B
Fragment: Set Domain (Unp Residues 2074-2293)
Synonym: Ash1-Like Protein,Huash1,Absent Small And Homeotic Protein 1 Homolog,Lysine N-Methyltransferase 2h;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash1l, Kiaa1420, Kmt2h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.217 R_Free 0.263
length a length b length c angle alpha angle beta angle gamma
58.838 58.838 232.152 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand SAM, ZN enzyme Transferase E.C. BRENDA
Primary referenceTwo Loops Undergoing Concerted Dynamics Regulate the Activity of the ASH1L Histone Methyltransferase., Rogawski DS, Ndoj J, Cho HJ, Maillard I, Grembecka J, Cierpicki T, Biochemistry. 2015 Aug 25. PMID:26292256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4ype.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (4ype.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4YPE
  • CSU: Contacts of Structural Units for 4YPE
  • Structure Factors (436 Kb)
  • Retrieve 4YPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YPE from S2C, [Save to disk]
  • Re-refined 4ype structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 4YPE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4ype from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ype] [4ype_B] [4ype_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YPE: [AWS] [PostSET] [SET ] by SMART
  • Other resources with information on 4YPE
  • Community annotation for 4YPE at PDBWiki (http://pdbwiki.org)

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