OCA Atlas for 4YPI

4YPI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, D, A, C

Primary reference

An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions., Leung DW, Borek D, Luthra P, Binning JM, Anantpadma M, Liu G, Harvey IB, Su Z, Endlich-Frazier A, Pan J, Shabman RS, Chiu W, Davey RA, Otwinowski Z, Basler CF, Amarasinghe GK, Cell Rep. 2015 Apr 21;11(3):376-89. doi: 10.1016/j.celrep.2015.03.034. Epub 2015 , Apr 9. PMID:25865894

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (511 Kb) [Save to disk]

Biological Unit Coordinates (4ypi.pdb1.gz) 127 Kb

Biological Unit Coordinates (4ypi.pdb2.gz) 128 Kb

Biological Unit Coordinates (4ypi.pdb3.gz) 128 Kb

Biological Unit Coordinates (4ypi.pdb4.gz) 128 Kb

CSU: Contacts of Structural Units for 4YPI

Structure Factors (485 Kb)

Retrieve 4YPI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4YPI from S2C, [Save to disk]

Re-refined 4ypi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YPI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ypi] [4ypi_A] [4ypi_B] [4ypi_C] [4ypi_D] [4ypi_E] [4ypi_F] [4ypi_G] [4ypi_H]

SWISS-PROT database:

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