4YQF Hydrolase date Mar 13, 2015
title Gtpase Domain Of Human Septin 9
authors S.O.Matos, D.A.Leonardo, J.N.Macedo, H.M.Pereira, A.P.U.Araujo, R.C.Garratt
compound source
Molecule: Septin-9
Chain: B, A
Fragment: Unp Residues 184-453
Synonym: Mll Septin-Like Fusion Protein Msf-A,Mll Septin-Li Protein,Ovarianbreast Septin,Ovbr Septin,Septin D1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sept9, Kiaa0991, Msf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.040 77.523 77.909 90.00 105.81 90.00
method X-Ray Diffractionresolution 2.73 Å
ligand GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (4yqf.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (4yqf.pdb2.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4YQF
  • CSU: Contacts of Structural Units for 4YQF
  • Structure Factors (143 Kb)
  • Retrieve 4YQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YQF from S2C, [Save to disk]
  • Re-refined 4yqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YQF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4yqf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yqf_A] [4yqf] [4yqf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YQF
  • Community annotation for 4YQF at PDBWiki (http://pdbwiki.org)

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