4YQM	Glutathione S-transferase Omega 1 bound to covalent inhibitor C1-27	date
authors	Stuckey, J.A.
compound		source
symmetry		R_factor R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.38
ligand	4G9, MES	enzyme
Gene Ontology	Chain Function Process Component A, C, B glutathione dehydrogenase (a... negative regulation of ryano... positive regulation of ryano...
Primary reference	Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor., Ramkumar K, Samanta S, Kyani A, Yang S, Tamura S, Ziemke E, Stuckey JA, Li S, Chinnaswamy K, Otake H, Debnath B, Yarovenko V, Sebolt-Leopold JS, Ljungman M, Neamati N, Nat Commun. 2016 Oct 5;7:13084. doi: 10.1038/ncomms13084. PMID:27703239

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (4yqm.pdb1.gz) 162 Kb Biological Unit Coordinates (4yqm.pdb2.gz) 161 Kb LPC: Ligand-Protein Contacts for 4YQM CSU: Contacts of Structural Units for 4YQM Structure Factors (852 Kb) Retrieve 4YQM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YQM from S2C, [Save to disk] Re-refined 4yqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YQM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4YQM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yqm] [4yqm_A] [4yqm_C] [4yqm_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4YQM

Community annotation for 4YQM at PDBWiki (http://pdbwiki.org)

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