4YR0 Mutant Human DNA Polymerase Eta R61M Inserting dCTP Opposite an 8-Oxoguanine Lesion date
authors Su, Y., Patra, A., Harp, J.M., Egli, M., Guengerich, F.P.
compound source
symmetry
R_factor
R_Free 0.2125
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.78
ligand 8OG, CA, DCP, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRoles of Residues Arg-61 and Gln-38 of Human DNA Polymerase Eta in Bypass of Deoxyguanosine and 7,8-Dihydro-8-oxo-2'-deoxyguanosine., Su Y, Patra A, Harp JM, Egli M, Guengerich FP, J Biol Chem. 2015 May 6. pii: jbc.M115.653691. PMID:25947374
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (4yr0.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4YR0
  • CSU: Contacts of Structural Units for 4YR0
  • Structure Factors (2217 Kb)
  • Retrieve 4YR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YR0 from S2C, [Save to disk]
  • Re-refined 4yr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YR0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YR0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yr0_A] [4yr0_P] [4yr0] [4yr0_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YR0
  • Community annotation for 4YR0 at PDBWiki (http://pdbwiki.org)

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