4YVA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAffinity Crystallography: A New Approach to Extracting High-Affinity Enzyme Inhibitors from Natural Extracts., Aguda AH, Lavallee V, Cheng P, Bott TM, Meimetis LG, Law S, Nguyen NT, Williams DE, Kaleta J, Villanueva I, Davies J, Andersen RJ, Brayer GD, Bromme D, J Nat Prod. 2016 Aug 26;79(8):1962-70. doi: 10.1021/acs.jnatprod.6b00215. Epub, 2016 Aug 6. PMID:27498895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4yva.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4YVA
  • CSU: Contacts of Structural Units for 4YVA
  • Structure Factors (208 Kb)
  • Retrieve 4YVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YVA from S2C, [Save to disk]
  • Re-refined 4yva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yva] [4yva_A]
  • SWISS-PROT database:
  • Domain found in 4YVA: [Pept_C1 ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science