4YVJ		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SFG	enzyme
Gene	HI
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD., Ito T, Masuda I, Yoshida K, Goto-Ito S, Sekine S, Suh SW, Hou YM, Yokoyama S, Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):E4197-205. doi:, 10.1073/pnas.1422981112. Epub 2015 Jul 16. PMID:26183229

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (4yvj.pdb1.gz) 109 Kb LPC: Ligand-Protein Contacts for 4YVJ CSU: Contacts of Structural Units for 4YVJ Structure Factors (165 Kb) Retrieve 4YVJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YVJ from S2C, [Save to disk] Re-refined 4yvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YVJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yvj] [4yvj_A] [4yvj_B] [4yvj_C] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---