4YWT Crystal structure of full-length glypican-1 core protein after controlled crystal dehydration to 87% relative humidity date
authors Awad, W., Mani, K., Logan, D.T.
compound source
symmetry
R_factor
R_Free 0.2728
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.38
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural aspects of N-glycosylations and the C-terminal region in human glypican-1., Awad W, Adamczyk B, Ornros J, Karlsson NG, Mani K, Logan DT, J Biol Chem. 2015 Jul 22. pii: jbc.M115.660878. PMID:26203194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (4ywt.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (4ywt.pdb2.gz) 140 Kb
  • Biological Unit Coordinates (4ywt.pdb3.gz) 131 Kb
  • Biological Unit Coordinates (4ywt.pdb4.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 4YWT
  • CSU: Contacts of Structural Units for 4YWT
  • Structure Factors (1321 Kb)
  • Retrieve 4YWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YWT from S2C, [Save to disk]
  • Re-refined 4ywt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YWT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ywt_C] [4ywt] [4ywt_D] [4ywt_A] [4ywt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YWT
  • Community annotation for 4YWT at PDBWiki (http://pdbwiki.org)

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