4YZD	Transferase	date	Mar 24, 2015
title	Crystal Structure Of Human Phosphorylated Ire1alpha In Compl Adp-Mg
authors	N.O.Concha
compound		source
Molecule: Serinethreonine-Protein Kinaseendoribonuclease Chain: A, B, C Fragment: Unp Residues 562-966 Synonym: Endoplasmic Reticulum-To-Nucleus Signaling 1,Inosi Requiring Protein 1,Hire1p,Ire1-Alpha,Ire1a; Ec: 2.7.11.1,3.1.26.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ern1, Ire1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9
symmetry	Space Group: C 1 2 1	R_factor 0.232 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 191.751 122.492 77.876 90.00 107.07 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	ADP, MG	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk] Biological Unit Coordinates (4yzd.pdb1.gz) 117 Kb Biological Unit Coordinates (4yzd.pdb2.gz) 114 Kb Biological Unit Coordinates (4yzd.pdb3.gz) 110 Kb LPC: Ligand-Protein Contacts for 4YZD CSU: Contacts of Structural Units for 4YZD Structure Factors (884 Kb) Retrieve 4YZD in mmCIF format [Save to disk] Re-refined 4yzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4YZD

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 4yzd from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yzd] [4yzd_A] [4yzd_B] [4yzd_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4YZD: [PUG] [STYKc ] by SMART

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