4YZI		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	OLA, RET, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Atomistic design of microbial opsin-based blue-shifted optogenetics tools., Kato HE, Kamiya M, Sugo S, Ito J, Taniguchi R, Orito A, Hirata K, Inutsuka A, Yamanaka A, Maturana AD, Ishitani R, Sudo Y, Hayashi S, Nureki O, Nat Commun. 2015 May 15;6:7177. doi: 10.1038/ncomms8177. PMID:25975962

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (4yzi.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 4YZI CSU: Contacts of Structural Units for 4YZI Structure Factors (350 Kb) Retrieve 4YZI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YZI from S2C, [Save to disk] Re-refined 4yzi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YZI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yzi] [4yzi_A] SWISS-PROT database: Domain found in 4YZI: [Bac_rhodopsin ] by SMART

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