4Z02 Histone-Binding Protein date Mar 25, 2015
title Crystal Structure Of Brd1 In Complex With Isoquinoline-3-Car Acid
authors A.Dong, A.Iqbal, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M.Edwar P.J.Brown, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bromodomain-Containing Protein 1
Chain: A, B
Fragment: Unp Residues 925-1049
Synonym: Br140-Like Protein,Bromodomain And Phd Finger-Cont Protein 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd1, Brl, Brpf2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Prare2-V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.257
length a length b length c angle alpha angle beta angle gamma
45.892 44.980 131.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand 4K8, EDO, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4z02.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (4z02.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4Z02
  • CSU: Contacts of Structural Units for 4Z02
  • Structure Factors (1108 Kb)
  • Retrieve 4Z02 in mmCIF format [Save to disk]
  • Re-refined 4z02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Z02, from MSDmotif at EBI
  • Fold representative 4z02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z02] [4z02_A] [4z02_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z02: [PWWP ] by SMART
  • Other resources with information on 4Z02
  • Community annotation for 4Z02 at PDBWiki (http://pdbwiki.org)

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