4Z0C Crystal structure of TLR13-ssRNA13 complex date
authors Song, W., Han, Z., Chai, J.
compound source
symmetry
R_factor
R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural basis for specific recognition of single-stranded RNA by Toll-like receptor 13., Song W, Wang J, Han Z, Zhang Y, Zhang H, Wang W, Chang J, Xia B, Fan S, Zhang D, Wang J, Wang HW, Chai J, Nat Struct Mol Biol. 2015 Oct;22(10):782-787. doi: 10.1038/nsmb.3080. Epub 2015, Aug 31. PMID:26323037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]
  • Biological Unit Coordinates (4z0c.pdb1.gz) 508 Kb
  • LPC: Ligand-Protein Contacts for 4Z0C
  • CSU: Contacts of Structural Units for 4Z0C
  • Structure Factors (1562 Kb)
  • Retrieve 4Z0C in mmCIF format [Save to disk]
  • Re-refined 4z0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z0c_C] [4z0c_A] [4z0c_B] [4z0c] [4z0c_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z0C: [LRR] [LRR_TYP ] by SMART
    • Other resources with information on 4Z0C
  • Community annotation for 4Z0C at PDBWiki (http://pdbwiki.org)

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