4Z1I Chaperone date Mar 27, 2015
title Crystal Structure Of Human Trap1 With Amppnp
authors C.Lee, H.K.Park, J.H.Ryu, B.H.Kang
compound source
Molecule: Heat Shock Protein 75 Kda, Mitochondrial
Chain: A, B, C, D
Fragment: Unp Residues 60-561
Synonym: Hsp 75,Tnfr-Associated Protein 1,Tumor Necrosis Fa Receptor-Associated Protein,Trap-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trap1, Hsp75
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.220 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.547 115.547 339.936 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (619 Kb) [Save to disk]
  • Biological Unit Coordinates (4z1i.pdb1.gz) 292 Kb
  • Biological Unit Coordinates (4z1i.pdb2.gz) 322 Kb
  • LPC: Ligand-Protein Contacts for 4Z1I
  • CSU: Contacts of Structural Units for 4Z1I
  • Structure Factors (266 Kb)
  • Retrieve 4Z1I in mmCIF format [Save to disk]
  • Re-refined 4z1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z1I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Z1I, from MSDmotif at EBI
  • Fold representative 4z1i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z1i_A] [4z1i] [4z1i_D] [4z1i_B] [4z1i_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z1I: [HATPase_c ] by SMART
  • Other resources with information on 4Z1I
  • Community annotation for 4Z1I at PDBWiki (http://pdbwiki.org)

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