4Z1Z Crystal Structure of Meganuclease I-SmaMI Bound to Uncleaveable DNA with a TTCT Central Four date
authors Hallinan, J.P., Stoddard, B.L.
compound source
symmetry
R_factor
R_Free 0.2861
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand CA, GOL enzyme
Gene SMAC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIndirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity., Lambert AR, Hallinan JP, Shen BW, Chik JK, Bolduc JM, Kulshina N, Robins LI, Kaiser BK, Jarjour J, Havens K, Scharenberg AM, Stoddard BL, Structure. 2016 Apr 27. pii: S0969-2126(16)30035-1. doi:, 10.1016/j.str.2016.03.024. PMID:27133026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4z1z.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (4z1z.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4Z1Z
  • CSU: Contacts of Structural Units for 4Z1Z
  • Structure Factors (297 Kb)
  • Retrieve 4Z1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z1Z from S2C, [Save to disk]
  • Re-refined 4z1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z1Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z1z_B] [4z1z_E] [4z1z_F] [4z1z] [4z1z_D] [4z1z_C] [4z1z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Z1Z
  • Community annotation for 4Z1Z at PDBWiki (http://pdbwiki.org)

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