4Z35 Transport Protein Inhibitor date Mar 30, 2015
title Crystal Structure Of Human Lysophosphatidic Acid Receptor 1 With Ono-9910539
authors J.E.Chrencik, C.B.Roth, M.Terakado, H.Kurata, R.Omi, Y.Kihara, D.Warshaviak, S.Nakade, G.Asmar-Rovira, M.Mileni, H.Mizuno, M.T. C.Rodgers, G.W.Han, J.Velasquez, J.Chun, R.C.Stevens, M.A.Hanson Network (Gpcr)
compound source
Molecule: Lysophosphatidic Acid Receptor 1,Soluble Cytochro
Chain: A
Synonym: Lpa-1,Lysophosphatidic Acid Receptor Edg-2,Cytochr Cytochrome B-562,Lpa-1,Lysophosphatidic Acid Receptor Edg-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Lpar1, Edg2, Lpa1, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_atcc_number: Crl-1711
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.265 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.610 112.400 155.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 1WV, ON9 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1., Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA, Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002. PMID:26091040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (4z35.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4Z35
  • CSU: Contacts of Structural Units for 4Z35
  • Structure Factors (286 Kb)
  • Retrieve 4Z35 in mmCIF format [Save to disk]
  • Re-refined 4z35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z35
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Z35, from MSDmotif at EBI
  • Fold representative 4z35 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z35] [4z35_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Z35
  • Community annotation for 4Z35 at PDBWiki (http://pdbwiki.org)

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