4Z4F Human Argonaute2 Bound to t1-DAP Target RNA date
authors Schirle, N.T., MacRae, I.J.
compound source
symmetry
R_factor
R_Free 0.2330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand IPH, MG, N6G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • core promoter sequence-speci...
  • translation initiation facto...
  • endoribonuclease activity
  • endoribonuclease activity, p...
  • siRNA binding
  • endoribonuclease activity, c...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (4z4f.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 4Z4F
  • CSU: Contacts of Structural Units for 4Z4F
  • Structure Factors (1513 Kb)
  • Retrieve 4Z4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z4F from S2C, [Save to disk]
  • Re-refined 4z4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z4F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z4f] [4z4f_D] [4z4f_A] [4z4f_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z4F: [DUF1785] [PAZ] [Piwi ] by SMART
  • Other resources with information on 4Z4F
  • Community annotation for 4Z4F at PDBWiki (http://pdbwiki.org)

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