4Z6G Cell Adhesion date Apr 05, 2015
title Structure Of Nt Domain
authors F.Yang, Y.Zhang
compound source
Molecule: Microtubule-Actin Cross-Linking Factor 1, Isoform
Chain: A
Fragment: Nt Domain (Unp Residues 74-421)
Synonym: 620 Kda Actin-Binding Protein,Abp620,Actin Cross-L Family Protein 7,Macrophin-1,Trabeculin-Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Macf1, Abp620, Acf7, Kiaa0465, Kiaa1251
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.088 94.088 192.634 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand PO4 enzyme
Primary referenceIn vivo epidermal migration requires focal adhesion targeting of ACF7., Yue J, Zhang Y, Liang WG, Gou X, Lee P, Liu H, Lyu W, Tang WJ, Chen SY, Yang F, Liang H, Wu X, Nat Commun. 2016 May 24;7:11692. doi: 10.1038/ncomms11692. PMID:27216888
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4z6g.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4Z6G
  • CSU: Contacts of Structural Units for 4Z6G
  • Structure Factors (253 Kb)
  • Retrieve 4Z6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z6G from S2C, [Save to disk]
  • Re-refined 4z6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z6G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4z6g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z6g] [4z6g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z6G: [CH ] by SMART
  • Other resources with information on 4Z6G
  • Community annotation for 4Z6G at PDBWiki (http://pdbwiki.org)

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