4Z8E Transcription date Apr 08, 2015
title Tead Dbd Mutant -Deltal1
authors D.S.Lee, D.C.Albarado, C.Vonrhein, C.S.Raman, S.Veeraraghavan
compound source
Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A, B, C
Fragment: Unp Residues 28-104
Synonym: Ntef-1, Protein Gt-Iic, Tea Domain Family Member 1 Transcription Factor 13, Tcf-13;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1, Tcf13, Tef1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: C 2 2 21
R_factor 0.224 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.590 96.547 84.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA Potential Structural Switch for Regulating DNA-Binding by TEAD Transcription Factors., Lee DS, Vonrhein C, Albarado D, Raman CS, Veeraraghavan S, J Mol Biol. 2016 Mar 22. pii: S0022-2836(16)00194-7. doi:, 10.1016/j.jmb.2016.03.008. PMID:27016204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (4z8e.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (4z8e.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (4z8e.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (4z8e.pdb4.gz) 115 Kb
  • CSU: Contacts of Structural Units for 4Z8E
  • Structure Factors (335 Kb)
  • Retrieve 4Z8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z8E from S2C, [Save to disk]
  • Re-refined 4z8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4z8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z8e_A] [4z8e_C] [4z8e_B] [4z8e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z8E: [TEA ] by SMART
  • Other resources with information on 4Z8E
  • Community annotation for 4Z8E at PDBWiki (http://pdbwiki.org)

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