4Z8W Crystal Structure of the Major Plantain Pollen Allergen Pla l 1 date
authors Freier, R., Brandstetter, H.
compound source
symmetry
R_factor
R_Free 0.2477
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.98
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Pla l 1 reveals both structural similarity and allergenic divergence within the Ole e 1-like protein family., Stemeseder T, Freier R, Wildner S, Fuchs JE, Briza P, Lang R, Batanero E, Lidholm J, Liedl KR, Campo P, Hawranek T, Villalba M, Brandstetter H, Ferreira F, Gadermaier G, J Allergy Clin Immunol. 2017 Jul;140(1):277-280. doi: 10.1016/j.jaci.2016.10.035., Epub 2016 Dec 10. PMID:27965108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (4z8w.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4Z8W
  • CSU: Contacts of Structural Units for 4Z8W
  • Structure Factors (213 Kb)
  • Retrieve 4Z8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z8W from S2C, [Save to disk]
  • Re-refined 4z8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Z8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Z8W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z8w_A] [4z8w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Z8W
  • Community annotation for 4Z8W at PDBWiki (http://pdbwiki.org)

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