4Z96 Hydrolase date Apr 09, 2015
title Crystal Structure Of Dnmt1 In Complex With Usp7
authors Z.M.Zhang, J.Song
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A
Fragment: Unp Residues 544-1067
Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (Cytosine-5)-Methyltransferase 1
Chain: C
Fragment: Unp Residues 1097-1129
Synonym: Dnmt1,Cxxc-Type Zinc Finger Protein 9,Dna Methyltr Hsai,M.Hsai,Mcmt;
Ec: 2.1.1.37
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnmt1, Aim, Cxxc9, Dnmt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.201 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.044 124.044 153.014 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (4z96.pdb1.gz) 180 Kb
  • CSU: Contacts of Structural Units for 4Z96
  • Structure Factors (471 Kb)
  • Retrieve 4Z96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z96 from S2C, [Save to disk]
  • Re-refined 4z96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4z96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z96_A] [4z96_C] [4z96]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Z96
  • Community annotation for 4Z96 at PDBWiki (http://pdbwiki.org)

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