4ZCF Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I date
authors Gupta, Y.K., Chan, S.H., Xu, S.Y., Aggarwal, A.K.
compound source
symmetry
R_factor
R_Free 0.2625
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand AMP, CA, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • endonuclease activity
  • site-specific DNA-methyltran...


    • C
  • endonuclease activity


    • Primary referenceStructural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I., Gupta YK, Chan SH, Xu SY, Aggarwal AK, Nat Commun. 2015 Jun 12;6:7363. doi: 10.1038/ncomms8363. PMID:26067164
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (4zcf.pdb1.gz) 298 Kb
  • LPC: Ligand-Protein Contacts for 4ZCF
  • CSU: Contacts of Structural Units for 4ZCF
  • Structure Factors (4701 Kb)
  • Retrieve 4ZCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZCF from S2C, [Save to disk]
  • Re-refined 4zcf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZCF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zcf_B] [4zcf_E] [4zcf_D] [4zcf_A] [4zcf] [4zcf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZCF
  • Community annotation for 4ZCF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science