4ZDG Structure of the Adenovirus 14p1 knob domain date
authors Fender, P., Ducournau, C., Zubieta, C.
compound source
symmetry
R_factor
R_Free 0.2455
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceIntracellular signaling and desmoglein 2 shedding triggered by human adenoviruses Ad3, Ad14, and Ad14P1., Wang H, Ducournau C, Saydaminova K, Richter M, Yumul R, Ho M, Carter D, Zubieta C, Fender P, Lieber A, J Virol. 2015 Aug 19. pii: JVI.01425-15. PMID:26292319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (4zdg.pdb1.gz) 92 Kb
  • CSU: Contacts of Structural Units for 4ZDG
  • Structure Factors (167 Kb)
  • Retrieve 4ZDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZDG from S2C, [Save to disk]
  • Re-refined 4zdg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZDG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZDG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zdg] [4zdg_C] [4zdg_A] [4zdg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZDG
  • Community annotation for 4ZDG at PDBWiki (http://pdbwiki.org)

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