4ZES Blood dendritic cell antigen 2 (BDCA-2) complexed with methyl-mannoside date
authors Jegouzo, S.A.F., Feinberg, H., Dungarwalla, T., Drickamer, K., Weis, W.I., Taylor, M.E.
compound source
symmetry
R_factor
R_Free 0.2143
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CA, MG, MMA enzyme
Primary referenceA novel mechanism for binding of galactose-terminated glycans by the C-type carbohydrate-recognition domain in blood dendritic cell antigen 2., Jegouzo SA, Feinberg H, Dungarwalla T, Drickamer K, Weis WI, Taylor ME, J Biol Chem. 2015 May 20. pii: jbc.M115.660613. PMID:25995448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (4zes.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4zes.pdb2.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4ZES
  • CSU: Contacts of Structural Units for 4ZES
  • Structure Factors (370 Kb)
  • Retrieve 4ZES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZES from S2C, [Save to disk]
  • Re-refined 4zes structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZES
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ZES, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zes_B] [4zes_A] [4zes]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZES: [CLECT ] by SMART
  • Other resources with information on 4ZES
  • Community annotation for 4ZES at PDBWiki (http://pdbwiki.org)

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