4ZGY Lyase Lyase Inhibitor date Apr 24, 2015
title Structure Of Human Ornithine Decarboxylase In Complex With A Terminal Fragment Of Antizyme
authors H.Y.Wu, N.L.Chan
compound source
Molecule: Ornithine Decarboxylase
Chain: A
Fragment: Unp Residues 2-421
Synonym: Odc
Ec: 4.1.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Odc1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: 28a-Odc

Molecule: Ornithine Decarboxylase Antizyme 1
Chain: B
Fragment: Unp Residues 95-219
Synonym: Odc-Az
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oaz1, Oaz
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30-Az95
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.698 73.368 162.084 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.63 Å
ligand MG, PLP enzyme Lyase E.C.4.1.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of antizyme-mediated regulation of polyamine homeostasis., Wu HY, Chen SF, Hsieh JY, Chou F, Wang YH, Lin WT, Lee PY, Yu YJ, Lin LY, Lin TS, Lin CL, Liu GY, Tzeng SR, Hung HC, Chan NL, Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11229-34. doi:, 10.1073/pnas.1508187112. Epub 2015 Aug 24. PMID:26305948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (4zgy.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 4ZGY
  • CSU: Contacts of Structural Units for 4ZGY
  • Structure Factors (297 Kb)
  • Retrieve 4ZGY in mmCIF format [Save to disk]
  • Re-refined 4zgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZGY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zgy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zgy_A] [4zgy_B] [4zgy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZGY
  • Community annotation for 4ZGY at PDBWiki (http://pdbwiki.org)

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