4ZKC Viral Protein Cytokine date Apr 30, 2015
title Orf Chemokine Binding Protein Complexed With Ccl7
authors K.M.Knapp, Y.Nakatani, K.L.Krause
compound source
Molecule: Chemokine Binding Protein
Chain: A
Fragment: Unp Residues 17-286
Engineered: Yes
Organism_scientific: Orf Virus (Strain Nz2)
Organism_common: Orfv
Organism_taxid: 10259
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293-6e
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptt5

Molecule: C-C Motif Chemokine 7
Chain: B
Fragment: Unp Residues 24-99
Synonym: Monocyte Chemoattractant Protein 3,Monocyte Chemot Protein 3,Mcp-3,Nc28,Small-Inducible Cytokine A7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl7, Mcp3, Scya6, Scya7
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293-6e
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptt5
symmetry Space Group: P 43 21 2
R_factor 0.260 R_Free 0.327
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.430 77.430 181.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cytokine activity
  • CCR1 chemokine receptor bind...
  • cellular calcium ion homeost...

  • Primary referenceStructures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity., Counago RM, Knapp KM, Nakatani Y, Fleming SB, Corbett M, Wise LM, Mercer AA, Krause KL, Structure. 2015 Jun 10. pii: S0969-2126(15)00192-6. doi:, 10.1016/j.str.2015.04.023. PMID:26095031
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4zkc.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4ZKC
  • CSU: Contacts of Structural Units for 4ZKC
  • Structure Factors (550 Kb)
  • Retrieve 4ZKC in mmCIF format [Save to disk]
  • Re-refined 4zkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZKC in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZKC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zkc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zkc_B] [4zkc_A] [4zkc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZKC: [SCY ] by SMART
  • Other resources with information on 4ZKC
  • Community annotation for 4ZKC at PDBWiki (http://pdbwiki.org)

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