4ZLD Crystal structure of human Roquin-2 ROQ domain in complex with Roquin CDE RNA date
authors Sakurai, S., Ohto, U., Shimizu, T.
compound source
symmetry
R_factor
R_Free 0.17635
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand GOL enzyme
Primary referenceStructure of human Roquin-2 and its complex with constitutive-decay element RNA., Sakurai S, Ohto U, Shimizu T, Acta Crystallogr F Struct Biol Commun. 2015 Aug 1;71(Pt 8):1048-54. doi:, 10.1107/S2053230X15011887. Epub 2015 Jul 29. PMID:26249698
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4zld.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4ZLD
  • CSU: Contacts of Structural Units for 4ZLD
  • Structure Factors (541 Kb)
  • Retrieve 4ZLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZLD from S2C, [Save to disk]
  • Re-refined 4zld structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZLD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zld_A] [4zld_B] [4zld]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZLD
  • Community annotation for 4ZLD at PDBWiki (http://pdbwiki.org)

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