4ZM0 Transcription date May 02, 2015
title Antitoxin Phd From Phage P1 In Complex With Its Operator Dna Repeat
authors A.Garcia-Pino, R.Loris
compound source
Molecule: Antitoxin Phd
Chain: A, B, C, D
Synonym: Addiction Protein Pdh,Prevent Host Death Protein
Engineered: Yes
Other_details: The C-Terminal Region Of The Protein Is Intr Disordered;
Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
Gene: Phd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dnarna (5'-D(Cptptpgptpgptpapcpapcpap
Chain: E, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678

Molecule: Dnarna (5'-D(Cpaptpgptpgptpapcpapcpap
Chain: F, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Enterobacteria Phage P1
Organism_taxid: 10678
symmetry Space Group: P 61 2 2
R_factor 0.223 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
165.980 165.980 156.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.17 Å
ligand 144, NA enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (4zm0.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4zm0.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 4ZM0
  • CSU: Contacts of Structural Units for 4ZM0
  • Structure Factors (176 Kb)
  • Retrieve 4ZM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZM0 from S2C, [Save to disk]
  • Re-refined 4zm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZM0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zm0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zm0_G] [4zm0] [4zm0_B] [4zm0_H] [4zm0_D] [4zm0_A] [4zm0_C] [4zm0_F] [4zm0_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZM0
  • Community annotation for 4ZM0 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science