4ZQ9 X-ray structure of AAV-2 OBD bound to AAVS1 site 3:1 date
authors Musayev, F.N., Zarate-Perez, F., Escalante, C.R.
compound source
symmetry
R_factor
R_Free 0.2295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MN enzyme
Primary referenceStructural Insights into the Assembly of the Adeno-Associated Virus Type 2 Rep68 Protein on the Integration site AAVS1., Musayev FN, Zarate-Perez F, Bishop C, Burgner JW 2nd, Escalante CR, J Biol Chem. 2015 Sep 14. pii: jbc.M115.669960. PMID:26370092
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (4zq9.pdb1.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 4ZQ9
  • CSU: Contacts of Structural Units for 4ZQ9
  • Structure Factors (656 Kb)
  • Retrieve 4ZQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZQ9 from S2C, [Save to disk]
  • Re-refined 4zq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZQ9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zq9_D] [4zq9_C] [4zq9_E] [4zq9_B] [4zq9] [4zq9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZQ9
  • Community annotation for 4ZQ9 at PDBWiki (http://pdbwiki.org)

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