4ZTU Dna Binding Protein Dna date May 15, 2015
title Structural Basis For Processivity And Antiviral Drug Toxicit Mitochondrial Dna Replicase
authors M.R.Szymanski, V.B.Kuznestov, C.K.Shumate, Q.Meng, Y.S.Lee, G.Pa S.S.Patel, Y.W.Yin
compound source
Molecule: Dna Polymerase Subunit Gamma-1
Chain: A
Fragment: Unp Residues 30-1239
Synonym: Mitochondrial Dna Polymerase Catalytic Subunit,Pol
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polg, Mdp1, Polg1, Polga
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Dna Polymerase Subunit Gamma-2, Mitochondrial
Chain: B, C
Synonym: Dna Polymerase Gamma Accessory 55 Kda Subunit,P55, Mitochondrial Dna Polymerase Accessory Subunit,Mtpolb,Polg-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polg2, Mtpolb
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Dna (25-Mer)
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Papapgpapcpgpapgpgpgpcpcpapgptpgpcpcpg -3');
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.316 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
217.575 217.575 168.277 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand DCT, DOC, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity


  • C, B
  • DNA-directed DNA polymerase ...


  • Primary referenceStructural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase., Szymanski MR, Kuznetsov VB, Shumate C, Meng Q, Lee YS, Patel G, Patel S, Yin YW, EMBO J. 2015 Jul 14;34(14):1959-70. doi: 10.15252/embj.201591520. Epub 2015 Jun, 8. PMID:26056153
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (4ztu.pdb1.gz) 297 Kb
  • LPC: Ligand-Protein Contacts for 4ZTU
  • CSU: Contacts of Structural Units for 4ZTU
  • Structure Factors (461 Kb)
  • Retrieve 4ZTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZTU from S2C, [Save to disk]
  • Re-refined 4ztu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZTU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4ztu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ztu_C] [4ztu_A] [4ztu_T] [4ztu_P] [4ztu_B] [4ztu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZTU: [POLAc ] by SMART
  • Other resources with information on 4ZTU
  • Community annotation for 4ZTU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science