4ZTZ Dna Binding Protein Dna date May 15, 2015
title Structural Basis For Processivity And Antiviral Drug Toxicit Mitochondrial Dna Replicase
authors M.R.Szymanski, Y.W.Yin
compound source
Molecule: Dna Polymerase Subunit Gamma-1
Chain: A
Fragment: Unp Residues 30-1239
Synonym: Mitochondrial Dna Polymerase Catalytic Subunit,Pol
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polg, Mdp1, Polg1, Polga
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Dna Polymerase Subunit Gamma-2, Mitochondrial
Chain: B, C
Synonym: Dna Polymerase Gamma Accessory 55 Kda Subunit,P55, Mitochondrial Dna Polymerase Accessory Subunit,Mtpolb,Polg-
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polg2, Mtpolb
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Dna (25-Mer)
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Lobariella Soredians
Organism_taxid: 1283102

Molecule: Dna (5'- D(Papapgpapcpgpapgpgpgpcpcpapgptpgpcpcpg -3');
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Lobariella Soredians
Organism_taxid: 1283102
symmetry Space Group: P 41 21 2
R_factor 0.280 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
217.600 217.600 165.709 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.44 Å
ligand DCP, DOC, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • 3'-5' exonuclease activity
  • cellular response to glucose...

  • C, B
  • DNA-directed DNA polymerase ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (4ztz.pdb1.gz) 298 Kb
  • LPC: Ligand-Protein Contacts for 4ZTZ
  • CSU: Contacts of Structural Units for 4ZTZ
  • Structure Factors (475 Kb)
  • Retrieve 4ZTZ in mmCIF format [Save to disk]
  • Re-refined 4ztz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZTZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4ztz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ztz_B] [4ztz_P] [4ztz_A] [4ztz] [4ztz_T] [4ztz_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZTZ: [POLAc ] by SMART
  • Other resources with information on 4ZTZ
  • Community annotation for 4ZTZ at PDBWiki (http://pdbwiki.org)

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