4ZUX	SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome	date
authors	Morgan, M., Wolberger, C.
compound		source
symmetry		R_factor R_Free 0.2559
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.82
ligand	ZN	enzyme
Gene	SCY
Gene Ontology	Chain Function Process Component B, F, L, P G, Q, M, C K, E, A, O N, H, D, R a, k, V, f enzyme activator activity d, Y, i, n g, W, b, l enzyme activator activity j, Z, e, U
Primary reference	Structural basis for histone H2B deubiquitination by the SAGA DUB module., Morgan MT, Haj-Yahya M, Ringel AE, Bandi P, Brik A, Wolberger C, Science. 2016 Feb 12;351(6274):725-8. doi: 10.1126/science.aac5681. PMID:26912860

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2148 Kb) [Save to disk] Biological Unit Coordinates (4zux.pdb1.gz) 1069 Kb Biological Unit Coordinates (4zux.pdb2.gz) 1071 Kb LPC: Ligand-Protein Contacts for 4ZUX CSU: Contacts of Structural Units for 4ZUX Structure Factors (1836 Kb) Retrieve 4ZUX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4ZUX from S2C, [Save to disk] Re-refined 4zux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4ZUX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4ZUX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4zux_L] [4zux_n] [4zux_Z] [4zux_B] [4zux_d] [4zux_X] [4zux_U] [4zux_D] [4zux_e] [4zux_P] [4zux_a] [4zux_i] [4zux_M] [4zux_c] [4zux_T] [4zux_N] [4zux_A] [4zux_V] [4zux_f] [4zux_m] [4zux_J] [4zux_H] [4zux] [4zux_Q] [4zux_j] [4zux_R] [4zux_g] [4zux_l] [4zux_h] [4zux_C] [4zux_b] [4zux_K] [4zux_E] [4zux_S] [4zux_I] [4zux_G] [4zux_F] [4zux_k] [4zux_W] [4zux_Y] [4zux_O] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4ZUX: [H2A] [H2B] [H3] [H4] [UBQ] [ZnF_UBP ] by SMART

Other resources with information on 4ZUX

Community annotation for 4ZUX at PDBWiki (http://pdbwiki.org)

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