4ZWJ Signaling Protein date May 19, 2015
title Crystal Structure Of Rhodopsin Bound To Arrestin By Femtosec Laser
authors Y.Kang, X.E.Zhou, X.Gao, Y.He, W.Liu, A.Ishchenko, A.Barty, T.A.Whi O.Yefanov, G.W.Han, Q.Xu, P.W.De Waal, J.Ke, M.H.E.Tan, C.Zhang, A G.M.West, B.Pascal, N.V.Eps, L.N.Caro, S.A.Vishnivetskiy, R.J.Le K.M.Suino-Powell, X.Gu, K.Pal, J.Ma, X.Zhi, S.Boutet, G.J.William M.Messerschmidt, C.Gati, N.A.Zatsepin, D.Wang, D.James, S.Basu, S Chowdhury, C.Conrad, J.Coe, H.Liu, S.Lisova, C.Kupitz, I.Grotjoha R.Fromme, Y.Jiang, M.Tan, H.Yang, J.Li, M.Wang, Z.Zheng, D.Li, N.Ho Y.Zhao, J.Standfuss, K.Diederichs, Y.Dong, C.S.Potter, B.Carragh M.Caffrey, H.Jiang, H.N.Chapman, J.C.H.Spence, P.Fromme, U.Weier O.P.Ernst, V.Katritch, V.V.Gurevich, P.R.Griffin, W.L.Hubbell, R.C.Stevens, V.Cherezov, K.Melcher, H.E.Xu, Gpcr Network (Gpcr)
compound source
Molecule: Chimera Protein Of Human Rhodopsin, Mouse S-Arres T4 Endolysin;
Chain: A, B, C, D
Synonym: Lysis Protein,Lysozyme,Muramidase,Opsin-2,48 Kda P Retinal S-Antigen,S-Ag,Rod Photoreceptor Arrestin;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage T4, Homo Sapiens, Musculus;
Organism_common: Human, Mouse
Organism_taxid: 10665, 9606, 10090
Cell_line: Hek293s
Gene: Rho, Opn2, Sag
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
symmetry Space Group: P 21 21 21
R_factor 0.253 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.240 109.240 452.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser., Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE, Nature. 2015 Jul 30;523(7562):561-7. doi: 10.1038/nature14656. Epub 2015 Jul 22. PMID:26200343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1086 Kb) [Save to disk]
  • Biological Unit Coordinates (4zwj.pdb1.gz) 291 Kb
  • Biological Unit Coordinates (4zwj.pdb2.gz) 236 Kb
  • Biological Unit Coordinates (4zwj.pdb3.gz) 278 Kb
  • Biological Unit Coordinates (4zwj.pdb4.gz) 292 Kb
  • CSU: Contacts of Structural Units for 4ZWJ
  • Structure Factors (1416 Kb)
  • Retrieve 4ZWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZWJ from S2C, [Save to disk]
  • Re-refined 4zwj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zwj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zwj_C] [4zwj_D] [4zwj_A] [4zwj] [4zwj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZWJ: [Arrestin_C ] by SMART
  • Other resources with information on 4ZWJ
  • Community annotation for 4ZWJ at PDBWiki (http://pdbwiki.org)

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