4ZZ7 Crystal structure of methylmalonate-semialdehyde dehydrogenase (DddC) from Oceanimonas doudoroffii date
authors Do, H., Lee, C.W., Lee, S.G., Kang, H., Park, C.M., Kim, H.J., Park, H., Park, H., Lee, J.H.
compound source
symmetry
R_factor
R_Free 0.24597
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand NAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (902 Kb) [Save to disk]
  • Biological Unit Coordinates (4zz7.pdb1.gz) 308 Kb
  • Biological Unit Coordinates (4zz7.pdb2.gz) 303 Kb
  • Biological Unit Coordinates (4zz7.pdb3.gz) 306 Kb
  • LPC: Ligand-Protein Contacts for 4ZZ7
  • CSU: Contacts of Structural Units for 4ZZ7
  • Structure Factors (2739 Kb)
  • Retrieve 4ZZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZZ7 from S2C, [Save to disk]
  • Re-refined 4zz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZZ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zz7_A] [4zz7_H] [4zz7_E] [4zz7_G] [4zz7] [4zz7_F] [4zz7_C] [4zz7_I] [4zz7_B] [4zz7_K] [4zz7_D] [4zz7_L] [4zz7_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZZ7
  • Community annotation for 4ZZ7 at PDBWiki (http://pdbwiki.org)

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