4DJH Structure of the human kappa opioid receptor in complex with JDTic date
authors Wu, H., Wacker, D., Katritch, V., Mileni, M., Han, G.W., Vardy, E., Liu, W., Thompson, A.A., Huang, X.P., Carroll, F.I., Mascarella, S.W., Westkaemper, R.B., Mosier, P.D., Roth, B.L., Cherezov, V., Stevens, R.C., GPCR, GPCR.Network.
compound source
symmetry
R_factor
R_Free 0.2646
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand CIT, JDC, OLC, PEG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the human kappa-opioid receptor in complex with JDTic., Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W, Thompson AA, Huang XP, Carroll FI, Mascarella SW, Westkaemper RB, Mosier PD, Roth BL, Cherezov V, Stevens RC, Nature. 2012 Mar 21;485(7398):327-32. doi: 10.1038/nature10939. PMID:22437504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (4djh.pdb1.gz) 295 Kb
  • Biological Unit Coordinates (4djh.pdb2.gz) 295 Kb
  • LPC: Ligand-Protein Contacts for 4DJH
  • CSU: Contacts of Structural Units for 4DJH
  • Structure Factors (484 Kb)
  • Retrieve 4DJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJH from S2C, [Save to disk]
  • Re-refined 4djh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DJH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4djh_B] [4djh_A] [4djh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DJH
  • Community annotation for 4DJH at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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