4G86	Crystal structure of the redox-active cofactor DBMIB bound to the full length circadian clock protein KaiA from Synechococcus elongatus	date
authors	Pattanayek, R., Egli, M.
compound		source
symmetry		R_factor R_Free 0.2650
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.39
ligand	1PE, 2PE, BNT, GOL	enzyme
Gene	SYNPCC7942
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of the Redox-Active Cofactor Dibromothymoquinone Bound to Circadian Clock Protein KaiA and Structural Basis for Dibromothymoquinone's Ability to Prevent Stimulation of KaiC Phosphorylation by KaiA., Pattanayek R, Sidiqi SK, Egli M, Biochemistry. 2012 Oct 5. PMID:23020633

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (4g86.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 4G86 CSU: Contacts of Structural Units for 4G86 Structure Factors (321 Kb) Retrieve 4G86 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4G86 from S2C, [Save to disk] Re-refined 4g86 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4G86 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4G86

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4G86, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4g86_B] [4g86] [4g86_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4G86: [KaiA ] by SMART

Other resources with information on 4G86

Community annotation for 4G86 at PDBWiki (http://pdbwiki.org)

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