4J3E The 1.9A crystal structure of humanized Xenopus Mdm2 with nutlin-3a date 2013-02-05
authors Graves, B.J., Lukacs, C.M., Kammlott, R.U., Crowther, R.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.91
ligand NUT, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of RG7112: A Small-Molecule MDM2 Inhibitor in Clinical Development., Vu B, Wovkulich P, Pizzolato G, Lovey A, Ding Q, Jiang N, Liu JJ, Zhao C, Glenn K, Wen Y, Tovar C, Packman K, Vassilev L, Graves B, ACS Med Chem Lett. 2013 Apr 2;4(5):466-9. doi: 10.1021/ml4000657. eCollection, 2013 May 9. PMID:24900694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (4j3e.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 4J3E
  • CSU: Contacts of Structural Units for 4J3E
  • Structure Factors (58 Kb)
  • Retrieve 4J3E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J3E from S2C, [Save to disk]
  • Re-refined 4j3e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J3E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J3E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J3E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j3e] [4j3e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J3E
  • Community annotation for 4J3E at PDBWiki (http://pdbwiki.org)

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