4JGV Crystal Structure of Human Nur77 Ligand-binding Domain in Complex with THPN date 2013-03-04
authors Zhang, Q., Li, F., Li, A., Tian, X., Wan, W., Wan, Y., Chen, H., Xing, Y., Wu, Q., Lin, T.
compound source
symmetry
R_factor
R_Free 0.25587
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.01
ligand GOL, T94 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOrphan nuclear receptor TR3 acts in autophagic cell death via mitochondrial signaling pathway., Wang WJ, Wang Y, Chen HZ, Xing YZ, Li FW, Zhang Q, Zhou B, Zhang HK, Zhang J, Bian XL, Li L, Liu Y, Zhao BX, Chen Y, Wu R, Li AZ, Yao LM, Chen P, Zhang Y, Tian XY, Beermann F, Wu M, Han J, Huang PQ, Lin T, Wu Q, Nat Chem Biol. 2014 Feb;10(2):133-40. doi: 10.1038/nchembio.1406. Epub 2013 Dec, 8. PMID:24316735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4jgv.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4JGV
  • CSU: Contacts of Structural Units for 4JGV
  • Structure Factors (191 Kb)
  • Retrieve 4JGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JGV from S2C, [Save to disk]
  • Re-refined 4jgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JGV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JGV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jgv_A] [4jgv_B] [4jgv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JGV: [HOLI ] by SMART
    • Other resources with information on 4JGV
  • Community annotation for 4JGV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science