4JJ7 Caspase-3 specific unnatural amino acid-based peptides date
authors Vickers, C.J., Gonzalez-Paez, G.E., Wolan, D.W.
compound source
symmetry
R_factor
R_Free 0.1567
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.18
ligand 1MH, 1U8, ACE, B3L, DTD, HLX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelective Detection of Caspase-3 versus Caspase-7 Using Activity-Based Probes with Key Unnatural Amino Acids., Vickers CJ, Gonzalez-Paez GE, Wolan DW, ACS Chem Biol. 2013 May 3. PMID:23614665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4jj7.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4JJ7
  • CSU: Contacts of Structural Units for 4JJ7
  • Structure Factors (1236 Kb)
  • Retrieve 4JJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JJ7 from S2C, [Save to disk]
  • Re-refined 4jj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JJ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JJ7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jj7_B] [4jj7_A] [4jj7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JJ7: [CASc ] by SMART
    • Other resources with information on 4JJ7
  • Community annotation for 4JJ7 at PDBWiki (http://pdbwiki.org)

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